DNPTrapper

DNPTrapper结合算法相对简单但功能强大的可视化问题的装配位置,从而为生物学家提供的详细信息,并允许快速决策做出必要的修正。DNPTrapper的主要目的是为用户提供更多的权力比其他工具。用户可以使用拖放移动序列;重新调整;剪切、复制和粘贴;上运行算法;添加和删除功能;选择视图模式;放大和缩小。用户界面是一个前端数据库,并使用捕捉器会自动更改传播到数据库。 DNPTrapper is essentially an editor that visualizes assemblies of shotgun sequence fragment reads as gapped multiple alignments. The assemblies can be produced by any assembler that produces the supported file formats (e.g. .ace-files from Phrap), and can be exported to the same format after repeat analysis and resolution. In addition to the read sequences, different features and data such as DNPs, vector sequence, quality values, chromatograms and mate pairs are visualized in the editor according to the preferences of the user. Sequence features can be present in the input assembly files, or be added during the finishing process by running default built-in algorithms that detect and label the desired features. DNPTrapper runs under Linux and requires Qt 3 and the Berkeley DB. DNPTrapper was developed using Berkeley DB version 4.3 and should work with later versions.